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Hello readers,

Welcome to the AI For All newsletter! Today, we’re talking about how AI is engineering phages that outsmart resistant bacteria, and more!

AI in Action: AI is writing viruses to beat nature's own

Bacteriophage ΦX174 has a genome under 6,000 base pairs, tiny by biology's standards but lethal enough to kill E. coli. In a new Stanford study, chemical engineer Brian Hie and graduate student Samuel King fed a short stretch of its DNA into Evo 2, a generative AI model Hie built to write entire genomes in one pass rather than edit existing ones. Evo 2 generated thousands of candidate phage genomes end to end, with no manual tweaking. The team synthesized nearly 300 of them, tested each against E. coli in the lab, and kept 16 that worked. A handful of Evo 2's designs turned out to have higher fitness than the natural phage they were modeled on.

The real payoff shows up against resistance. Bacteria eventually evolve immunity to any single phage, the same way they do to antibiotics — but a cocktail of genetically distinct phages is much harder to outmaneuver. Hie's team mixed their 16 AI-designed phages together and showed the blend rapidly overcame E. coli that had already become immune to the natural version, a result published in Science this week. Hie says the same approach could extend to phages targeting tuberculosis, MRSA, and Pseudomonas aeruginosa — bacteria behind some of the toughest hospital-acquired infections.

Hie has released Evo 2 as open-source software, free for anyone to use. His reasoning: naturally occurring pathogens are already easier to access and produce than anything an AI model could design, and unlike evolution, an AI tool can have safety checks built into it from the start. He's now pushing Evo 2 toward longer, more complex DNA — including whole bacterial genomes engineered to produce useful chemicals and medicines.

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📖 What We’re Reading

A model that watches a video, reads its captions, and hears its narration has to agree with itself about what just happened. That agreement does not come from the architecture. It comes from the labels underneath it, and from the people who decided what each frame, sentence, and sound clip actually means. 

Multimodal foundation models raise the stakes on that decision, because a single training example now carries several modalities that all have to point at the same interpretation. This is why data labeling services have moved from a back-office chore to a determinant of model quality.

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